Team involving the University of Freiburg has developed a new analytical method for the basement membrane in human lungs


  • Team involving the University of Freiburg has developed a new analytical method for the basement membrane in human lungs.
  • The mechanical properties of this protein structure are a crucial factor during metastasis formation.

A detailed and user-friendly step-by-step guide to the new method has appeared in Nature Protocols.

Metastases are largely responsible for the death rate of patients with solid cancers; the prognosis of cancer patients reduces significantly if metastases are diagnosed. Till now there was no procedure available to reliably predict the probability of future metastases. A team of scientists from Denmark and Germany led by Junior-Professor Dr. Raphael Reuten from the Medical Faculty at the University of Freiburg and Professor Hauke Clausen-Schaumann from Munich University of Applied Sciences (HM) has now taken the first step toward early diagnosis of metastasis formation: they have developed a user-friendly method for analysing the basement membrane in the human body – because its mechanical properties are a crucial factor during the metastatic process. These results have been published in the renowned scientific journal Nature Protocols.

Softer basement membranes are harder to overcome

“We’re convinced that the publication of this method in the form of a detailed protocol will make it possible to get closer to an early diagnosis of metastasis formation,” says Reuten. Using the protocol, scientists around the world will be able to identify if various individuals possess distinct basement membrane mechanics, and whether these are associated with metastasis formation. The basement membrane is a structure of the extracellular matrix – the protein mass outside cells – that surrounds all blood vessels, many organs and also tumours.

In the past it was assumed that this structure was only a barrier that cancer cells have to overcome with the help of their own mechanisms. However, in a paper from 2021, Reuten and Clausen-Schaumann were able to show that the mechanical properties of the basement membrane is itself a decisive factor influencing the metastasis of cancer cells and therefore also the prognosis of cancer patients: the softer the basement membrane, the fewer cancer cells overcome this barrier – resulting in a decrease in metastases – and extended survival.

Analysis by semi-automated software

Together with the University Medical Center Freiburg’s obstetrics and gynecology clinic and the pathology department at Copenhagen’s Rigshospitalet, the scientists have now published an analysis tool in the form of a detailed and user-friendly step-by-step guide, showing how to determine the mechanical properties of the basement membrane in human lungs. The team has also made semi-automated software for the analysis of measurement data and identification of the basement membrane available to the scientific community. This software will in future become even more powerful with Artificial Intelligence. “Once there are more comprehensive data, fully-automated recognition of the basement membrane using machine learning will be implemented,” says the first-author of the study, Bastian Hartmann from the Munich University of Applied Sciences (HM).

The basement membrane has a thickness of only 100 to 400 nanometres (roughly one ten-thousandth of a millimetre). “Localising it exactly in the tissue, measuring its mechanical properties and discerning this precisely from that of the surrounding tissue was an exceptional challenge,” says biophysicist Hauke Clausen-Schaumann. “We were able to solve this with a combination of optical microscopy and atomic force microscopy.” The new protocol now expands this procedure to include the basement membrane of human lungs making it feasible for non-experienced users.

Additional findings for cancer research

The scientists anticipate important findings for cancer research to be obtained with their method. This is because although tumors reshape many structures in the body to make them meet their needs, independently of such cancer-related changes the individual mechanical properties of the basement membrane have a crucial influence on the process of metastasis. Therefore, it might be possible, Reuten theorises, that certain mechanisms of the basement membrane make some people in principle more vulnerable to develop metastasis.

Summary:

· Original publication: Bastian Hartmann, Lutz Fleischhauer, Monica Nicolau, Thomas Hartvig Lindkær Jensen, Florin-Andrei Taran, Hauke Clausen-Schaumann, Raphael Reuten: Profiling native pulmonary basement membrane stiffness using atomic force microscopy. In: Nature Protocols

· Dr. Raphael Reuten has been a junior professor at the University of Freiburg’s Institute of Experimental and Clinical Pharmacology and Toxicology since mid-2021 and spearheads the MatriTecture Lab research group. His focus is on the influence of the extracellular architecture on cellular processes and in particular the progression of tumors, with the aim of applying matrix-based diagnostic and therapeutic strategies in day-to-day clinical use.

· Professor Hauke Clausen-Schaumann researches at the Munich University of Applied Sciences’ Center for Applied Tissue Engineering and Regenerative Medicine. His specialism is identifying the mechanical properties of biomaterials on the nanometre scale. Bastian Hartmann is a doctoral student on Clausen-Schaumann’s team, with a focus on nanomechanical investigations of tissue using the atomic force microscope.

· The project was funded by the Bavarian State Ministry of Science and the Arts, the Bavarian Academic Forum (BayWISS), the German Research Foundation (DFG) and the Danish Cancer Society.

Full bibliographic information

Published on 04/03/2024 by Albert-Ludwigs-Universität Freiburg
Original publication: Bastian Hartmann, Lutz Fleischhauer, Monica Nicolau, Thomas Hartvig Lindkær Jensen, Florin-Andrei Taran, Hauke Clausen-Schaumann, Raphael Reuten: Profiling native pulmonary basement membrane stiffness using atomic force microscopy. In: Nature Protocols
DOI: https://doi.org/10.1038/s41596-024-00955-7
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